OSD2014: Ocean Sampling Day 2014, registry of samples and environmental measurements from 2014
Citation
Participants of Ocean Sampling Day 2014: Registry of samples and environmental measurements from 2014. https://doi.pangaea.de/10.1594/PANGAEA.854419. https://marineinfo.org/doc/dataset/8044
Contact:
Exter, Katrina ;
Also accessible through: Availability:
 This dataset is licensed under a Creative Commons Attribution 4.0 International License.Description
Ocean Sampling Day is a simultaneous sampling campaign of the world's oceans which took place for the first time on the summer solstice of 2014, and was picked up again in 2018. Water samples and environmental measurements were made by the OSD participants, with the water samples being processed into DNA sequences. more
Ocean Sampling Day was a project that began in 2014 and in 2018 the OSD network was picked up by the Horizon 2020 project ASSEMBLE Plus. During each Ocean Sampling Day, water samples are taken from locations scattered over the globe and they are shipped to a central location for genomic sequencing. Environmental measurements are made and recorded in logsheets. All activities follow a set of protocols and the environmental data conform to standard vocabularies. The data from 2014 is published in PANGEA (https://doi.org/10.1594.PANGEA.854419), while the metadata records for the OSD 2018+ events can be found here in IMIS (see the related datasets listed in this record). The original OSD2014 data should be accessed via PANGEA; however, as the OSD2018+ data are provided via IMIS and via the OSD Github site (see data links in this record) in machine-accessible and annotated formats, we have also provided the OSD2014 data in machine-accessible and annotated formats via the OSD Github site. Those data consist of: a CSV file with the IDs, dates, locations, environmental measurements, and the IDs of the data in ENA (European Nucleotide Archive); a CSV file containing the metadata descriptions of those data; the protocols and the OSD Handbook. Scope Keywords: AE, North Atlantic · ANE, Baltic, Finland Gulf · ANE, Biscay Bay · ANE, Celtic Sea · ANE, English Channel · ANE, Greenland Sea · ANE, Irish Sea · ANE, Kattegat · ANE, North Sea · ANE, Skagerrak · AS, South Atlantic · ASSEMBLEPlus Joint Research Activity 1 · ASW, Caribbean · ASW, Mexico Gulf · Biodiversity · Biological sampling · Data · Environmental surveys · INE · INW, Japan Sea · ISE · ISE, Mexico, California Gulf · ISEW, Coral Sea · ISW, Aqaba Gulf · ISW, Bengal Bay · ISW, Red Sea · Marine metagenome · MED, Adriatic · MED, Aegean · MED, Alboran Sea · MED, Balearic Sea · MED, Black Sea · MED, Eastern Mediterranean · MED, Gibraltar Strait · MED, Ionian Sea · MED, Tyrrhenian Sea · MED, Western Mediterranean · Metabarcoding · Metagenomics · Nucleic acids · Adriatic Sea · Aegean Sea · Alboran Sea · Balearic Sea · Bay of Bengal · Bay of Biscay · Black Sea · Caribbean Sea · Celtic Sea · Coral Sea · English Channel · Greenland Sea · Gulf of Aqaba · Gulf of California · Gulf of Finland · Gulf of Mexico · Ionian Sea · Irish Sea and St. George's Channel · Japan Sea/East Sea · Kattegat · Mediterranean Sea - Eastern Basin · Mediterranean Sea - Western Basin · North Atlantic Ocean · North Pacific Ocean · North Sea · Red Sea · Scottish West Coast · Skagerrak · South Atlantic Ocean · South Pacific Ocean · Strait of Gibraltar · Tyrrhenian Sea Geographical coverage Adriatic Sea [Marine Regions] Aegean Sea [Marine Regions] Alboran Sea [Marine Regions] Balearic Sea [Marine Regions] Bay of Bengal [Marine Regions] Bay of Biscay [Marine Regions] Black Sea [Marine Regions] Caribbean Sea [Marine Regions] Celtic Sea [Marine Regions] Coral Sea [Marine Regions] English Channel [Marine Regions] Greenland Sea [Marine Regions] Gulf of Aqaba [Marine Regions] Gulf of California [Marine Regions] Gulf of Finland [Marine Regions] Gulf of Mexico [Marine Regions] Ionian Sea [Marine Regions] Irish Sea and St. George's Channel [Marine Regions] Japan Sea/East Sea [Marine Regions] Kattegat [Marine Regions] Mediterranean Sea - Eastern Basin [Marine Regions] Mediterranean Sea - Western Basin [Marine Regions] North Atlantic Ocean [Marine Regions] North Pacific Ocean [Marine Regions] North Sea [Marine Regions] Red Sea [Marine Regions] Scottish West Coast [Marine Regions] Skagerrak [Marine Regions] South Atlantic Ocean [Marine Regions] South Pacific Ocean [Marine Regions] Strait of Gibraltar [Marine Regions] Tyrrhenian Sea [Marine Regions] Temporal coverage
From 21 June 2014 on [Completed] Not relevant Parameters
Alkalinity (pH) Ammonium (NH4+) Conductivity Depth Dissolved organic carbon (DOC) Dissolved Oxygen concentration Fluorescence Nitrate (NO3-) Nitrite (NO2-) Organic matter concentration Phosphate (PO43-) Pigment concentration Plankton Salinity Silicate (SiO44-) Temperature Contributors
Natural Environment Research Council; British Antarctic Survey (BAS), more, data manager
European Molecular Biology Laboratory; European Bioinformatics Institute (EBI), more, data manager
Max Planck Institute for Marine Microbiology (MPIMM), more, co-ordinator
Vlaams Instituut voor de Zee (VLIZ), more
Related datasets
Project
Micro B3: Marine Microbial Biodiversity, Bioinformatics and Biotechnology, more
Grant agreement ID FP7-OCEAN-2011
Publication
Describing this dataset
Kopf, A. et al. (2015). The ocean sampling day consortium. GigaScience 4: 27. http://dx.doi.org/10.1186/s13742-015-0066-5, more
ten Hoopen, A. et al. (2015). Marine microbial biodiversity, bioinformatics and biotechnology (M2B3) data reporting and service standards. Stand Genomic Sci. 10: 20 [1-10]. https://dx.doi.org/10.1186/s40793-015-0001-5, more
Dataset status: Completed
Data type: Data
Data origin: Monitoring: field survey
Release date: 2022-03-07
Metadatarecord created: 2022-03-07
Information last updated: 2022-10-21
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